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  Section: Biotechnology Methods » Molecular Biology
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DNA Extraction of Rhizobium (CsCl Method)

Molecular Biology
  The Central Dogma
  Protein Synthesis in Cell Free Systems
  Polytene Chromosomes of Dipterans
  Salivary Gland Preparation (Squash Technique)
  Extraction of Chromatin
  Chromatin Electrophoresis
  Extraction and Electrophoresis of Histones
  Karyotype Analysis
  In Situ Hybridization
  Culturing Peripheral Blood Lymphocytes
  Microslide Preparation of Metaphases for In-Situ Hybridization
  Staining Chromosomes (G-Banding)
  Nucleic Acids
  Extraction of DNA from Bovine Spleen
  Purification of DNA
  Characterization of DNA
  DNA-Dische Diphenylamine Determination
  Melting Point Determination
  CsCl-Density Separation of DNA
  Phenol Extraction of rRNA (Rat liver)
  Spectrophotometric Analysis of rRNA
  Determination of Amount of RNA by the Orcinol Method
  Sucrose Density Fractionation
  Nucleotide Composition of RNA
  Isolation of Genomic DNA—DNA Extraction Procedure
  Isolation of Genomic DNA from Bacterial Cells
  Preparation of Genomic DNA from Bacteria
  Extraction of Genomic DNA from Plant Source
  Extraction of DNA from Goat Liver
  Isolation of Cotton Genomic DNA from Leaf Tissue
  Arabidopsis Thaliana DNA Isolation
  Plant DNA Extraction
  Phenol/Chloroform Extraction of DNA
  Ethanol Precipitation of DNA
  Isolation of Mitochondrial DNA
  Isolation of Chloroplast DNA
  DNA Extraction of Rhizobium (CsCl Method)
  Isolation of Plasmids
  RNA Isolation
  Preparation of Vanadyl-Ribonucleoside Complexes that Inhibit Ribonuclease Activity
  RNA Extraction Method for Cotton
  Isolation of RNA from Bacteroids
  Isolation of RNA from Free-Living Rhizobia
  Estimation of DNA purity and Quantification
  Fungal DNA Isolation
  Methylene Blue DNA Staining
  Blotting Techniques—Southern, Northern, Western Blotting
  Preparing the Probe
  Southern Blotting (First Method)
  Southern Blotting (Second Method)
  Western Blotting
  Western Blot Analysis of Epitoped-tagged Proteins using the Chemifluorescent Detection Method for Alkaline Phosphatase-conjugated Antibodies
  Southern Blot
  Southern Analysis of Mouse Toe/Tail DNA
  Northern Blotting
  Restriction Digestion Methods—Restriction Enzyme Digests
  Restriction Digestion of Plasmid, Cosmid, and Phage DNAs
  Manual Method of Restriction Digestion of Human DNA
  Preparation of High-Molecular-Weight Human DNA Restriction Fragments in Agarose Plugs
  Restriction Enzyme Digestion of DNA
  Electroelution of DNA Fragments from Agarose into Dialysis Tubing
  Isolation of Restriction Fragments from Agarose Gels by Collection onto DEAE Cellulose
  Ligation of Insert DNA to Vector DNA
  PCR Methods (Polymerase Chain Reaction)
  Polymerase Chain Reaction
  DNA Amplification by the PCR Method
  1. Grow starter culture overnight in 5 mL GYPC medium.
  2. Inoculate 200 mL GYPC and grow cells to mid-late log phase (visual).
  3. Pellet cells by centrifugation. Resuspend cells in 5 mL 10 mM Tris (pH 8.0), 4 mM EDTA. Then add 150 mL more buffer to wash cells.
  4. Repellet cells and resuspend in 4 mL 50 mM Tris (pH 8), 20 mM EDTA in a small flask. Place on ice for 15 min.
  5. Add 0.4 mL proteinase K (2 mg/mL, fresh); swirl for 5 min. Then add 0.1–0.2 mL sarcosyl (10%). Swirl gently at 30°C–37°C until cell lysis (about 30 min–1 hr).
  6. Extract 3X with equal volume of Trisequilibrated phenol and centrifuge at 7000X rpm for 15 min. Transfer top layer to new tube (avoid interface). Redo this step if necessary.
  7. Extract 2X with diethyl ether. Remove and properly discard top layer after centrifugation at 5000X rpm for 5 min. Evaporate ether overnight in fume hood, or heat in 68°C water bath for 30 min.
  8. Adjust aqueous phase to 8.7 mL with buffer. To this, add 8.3 g CsCl and 0.9 mL ethidium bromide (10 mg/mL).
  9. Extract with equal volume chloroform (mix by inverting) and centrifuge at 10000X g for 5 min. Transfer top layer to a new tube.
  10. Place in Quick-seal tubes and centrifuge in Ti50 rotor at 36000 rpm for 48 hrs.


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